{ "_id": "6ad0bcc2b0a1b4b4099d7904", "Package": "pfwim", "Title": "Food Web Construction for Paleo Communities", "Version": "1.0.2", "Authors@R": "c(\nperson(\"Tanya\", \"Strydom\", role = c(\"aut\", \"cre\"), email = \"t.strydom@sheffield.ac.uk\",\ncomment = c(ORCID = \"0000-0001-6067-1349\")),\nperson(\"Jack O.\", \"Shaw\", role = c(\"ctb\"),\ncomment = c(ORCID = \"0000-0002-2725-2334\")),\nperson(\"Alexander M.\", \"Dunhill\", role = \"ctb\",\ncomment = c(ORCID = \"0000-0002-8680-9163\")),\nperson(\"Andrew\", \"Beckerman\", role = \"ctb\",\ncomment = c(ORCID = \"0000-0002-4797-9143\")),\nperson(\"Baran\", \"Karapunar\", role = \"ctb\",\ncomment = c(ORCID = \"0000-0001-9711-1492\")),\nperson(\"Jennifer A.\", \"Dunne\", role = \"ctb\",\ncomment = c(ORCID = \"0000-0002-3789-9561\")),\nperson(\"Pincelli M.\", \"Hull\", role = \"ctb\",\ncomment = c(ORCID = \"0000-0001-8607-4817\"))\n)", "Description": "R tools for reconstructing paleo food webs from species\ntraits and size rules.", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.3", "LazyData": "true", "Config/testthat/edition": "3", "VignetteBuilder": "knitr", "URL": "https://beckslab.github.io/pfwim/,\nhttps://github.com/BecksLab/pfwim", "Config/pak/sysreqs": "libicu-dev", "Repository": "https://beckslab.r-universe.dev", "Date/Publication": "2026-06-04 11:53:56 UTC", "RemoteUrl": "https://github.com/beckslab/pfwim", "RemoteRef": "HEAD", "RemoteSha": "f1574173ec2a9aed1b4f6cd4b973535501cc57ea", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-15 11:42:29 UTC", "User": "root" }, "Author": "Tanya Strydom [aut, cre] (ORCID:\n),\nJack O. Shaw [ctb] (ORCID: ),\nAlexander M. Dunhill [ctb] (ORCID:\n),\nAndrew Beckerman [ctb] (ORCID: ),\nBaran Karapunar [ctb] (ORCID: ),\nJennifer A. Dunne [ctb] (ORCID:\n),\nPincelli M. Hull [ctb] (ORCID: )", "Maintainer": "Tanya Strydom ", "_user": "beckslab", "_type": "src", "_file": "pfwim_1.0.2.tar.gz", "_fileid": "https://r2.ropensci.org/eae0e7c05a1df4048776c1fb700348c3a7528ef1cacc53db77c27bf81e6d3118", "_filesize": 1394051, "_sha256": "eae0e7c05a1df4048776c1fb700348c3a7528ef1cacc53db77c27bf81e6d3118", "_expires": "2027-01-23T11:45:04.000Z", "_created": "2026-10-15T11:42:29.000Z", "_published": "2026-10-15T11:45:06.617Z", "_buildurl": "https://github.com/r-universe/beckslab/actions/runs/38728880814", "_status": "success", "_host": "GitHub-Actions", "_jobs": [ { "job": 116402761626, "time": 110, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11969048031" }, { "job": 116402761487, "time": 120, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11968868229" }, { "job": 116402761480, "time": 100, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "11969477673" }, { "job": 116402761566, "time": 107, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11969872594" }, { "job": 116401549461, "time": 180, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11969762209" }, { "job": 116402761616, "time": 103, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11969747660" }, { "job": 116402761630, "time": 76, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11969342860" }, { "job": 116402761612, "time": 98, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "11970042323" }, { "job": 116402761632, "time": 61, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11969208070" } ], "_upstream": "https://github.com/beckslab/pfwim", "_commit": { "id": "f1574173ec2a9aed1b4f6cd4b973535501cc57ea", "author": "Tanya Strydom ", "committer": "Tanya Strydom ", "message": "🌸 orcid f-up\n", "time": 1780574036 }, "_maintainer": { "name": "Tanya Strydom", "email": "t.strydom@sheffield.ac.uk", "login": "tanyas08", "bluesky": "@tanyadoesscience.bsky.social", "orcid": "0000-0001-6067-1349", "description": "Dinosaur web weaver at @BecksLab, former padawan @PoisotLab, and occasional data visualiser", "uuid": 61696728 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5", "role": "Depends" }, { "package": "dplyr", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "tibble", "role": "Imports" }, { "package": "tidyr", "role": "Imports" }, { "package": "tidyselect", "role": "Imports" }, { "package": "igraph", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" } ], "_owner": "beckslab", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2026-10", "n": 7 }, { "week": "2026-11", "n": 31 }, { "week": "2026-12", "n": 3 }, { "week": "2026-14", "n": 10 }, { "week": "2026-15", "n": 1 }, { "week": "2026-17", "n": 5 }, { "week": "2026-18", "n": 4 }, { "week": "2026-23", "n": 1 } ], "_tags": [ { "name": "v1.0.0", "date": "2026-04-02" }, { "name": "V1.0.1", "date": "2026-04-25" }, { "name": "V1.0.2", "date": "2026-04-25" }, { "name": "V1.0.03", "date": "2026-06-04" } ], "_stars": 0, "_contributors": [ { "user": "tanyas08", "count": 65, "uuid": 61696728 }, { "user": "cemacrr", "count": 7, "uuid": 39555892 }, { "user": "jackolivershaw", "count": 1, "uuid": 32178053 } ], "_userbio": { "uuid": 93547161, "type": "organization", "name": "The Beckerman Lab", "followers": 13, "description": "The Beckerman Lab Central Research Repository" }, "_downloads": { "count": 278, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/pfwim" }, "_devurl": "https://github.com/beckslab/pfwim", "_pkgdown": "https://beckslab.github.io/pfwim/", "_searchresults": 0, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/pfwim.html", "extra/readme.html", "extra/readme.md", "LICENSE" ], "_homeurl": "https://github.com/beckslab/pfwim", "_realowner": "beckslab", "_cranurl": true, "_releases": [ { "version": "1.0.2", "date": "2026-04-28" } ], "_exports": [ "infer_edgelist", "powerlaw_prey" ], "_datasets": [ { "name": "feeding_rules", "title": "Example feeding rules for 'traits'", "object": "feeding_rules", "class": [ "data.frame" ], "fields": [ "trait_type_resource", "trait_resource", "trait_type_consumer", "trait_consumer" ], "rows": 19, "table": true, "tojson": true }, { "name": "traits", "title": "Example species traits data to infer feeding rules", "object": "traits", "class": [ "data.frame" ], "fields": [ "species", "motility", "habitat", "feeding", "size" ], "rows": 10, "table": true, "tojson": true } ], "_help": [ { "page": "feeding_rules", "title": "Example feeding rules for 'traits'", "topics": [ "feeding_rules" ] }, { "page": "infer_edgelist", "title": "Infer trophic interactions using PFWIM trait rules", "topics": [ "infer_edgelist" ] }, { "page": "powerlaw_prey", "title": "Generate hypothetical realised webs using a power-law link distribution", "topics": [ "powerlaw_prey" ] }, { "page": "traits", "title": "Example species traits data to infer feeding rules", "topics": [ "traits" ] } ], "_pkglogo": "https://github.com/beckslab/pfwim/raw/HEAD/man/figures/logo.png", "_readme": "https://github.com/beckslab/pfwim/raw/HEAD/README.md", "_rundeps": [ "cli", "cpp11", "dplyr", "generics", "glue", "lifecycle", "magrittr", "pillar", "pkgconfig", "purrr", "R6", "rlang", "stringi", "stringr", "tibble", "tidyr", "tidyselect", "utf8", "vctrs", "withr" ], "_vignettes": [ { "source": "pfwim_02_metawebs.Rmd", "filename": "pfwim_02_metawebs.html", "title": "Building a Metaweb", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Inferring the Metaweb", "Converting the Edgelist to an igraph Network", "Visualising the Metaweb" ], "created": "2026-03-30 11:14:16", "modified": "2026-03-30 11:14:16", "commits": 1 }, { "source": "pfwim_03_realised_webs.Rmd", "filename": "pfwim_03_realised_webs.html", "title": "Generating Realised Food Webs", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Generate the Metaweb", "Generating Multiple Realised Webs", "Creating a consensus Realised Web", "Visualising the Consensus Web", "Weighted Consensus Web" ], "created": "2026-03-30 11:14:16", "modified": "2026-03-30 11:14:16", "commits": 1 }, { "source": "pfwim_01_workflow.Rmd", "filename": "pfwim_01_workflow.html", "title": "PFWIM Workflow", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Data Structure Requirements", "Taxon Trait Data (data)", "Feeding Rules (cat_combo_list)", "Infer Edgelist", "Generate Realised Webs with Power-Law", "Customizing the Power-Law Distribution" ], "created": "2026-03-30 11:14:16", "modified": "2026-03-30 12:03:31", "commits": 2 }, { "source": "pfwim_04_cont_size.Rmd", "filename": "pfwim_04_cont_size.html", "title": "Using Continuous Variables", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Prepare Numerical Data", "Define the Size Rule Function", "Run Inference with Size Constraints" ], "created": "2026-03-30 12:16:38", "modified": "2026-04-25 10:02:21", "commits": 3 } ], "_score": 5.505149978319906, "_indexed": true, "_nocasepkg": "pfwim", "_universes": [ "beckslab", "tanyas08" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.0.2", "date": "2026-10-15T11:44:15.000Z", "distro": "resolute", "commit": "f1574173ec2a9aed1b4f6cd4b973535501cc57ea", "fileid": "https://r2.ropensci.org/7f916d6ee102a8933ecbe9b13a42fe49969ea106b40e8f11dc4c07143c1ceab3", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/beckslab/actions/runs/38728880814" }, { "r": "4.6.1", "os": "linux", "version": "1.0.2", "date": "2026-10-15T11:44:24.000Z", "distro": "resolute", "commit": "f1574173ec2a9aed1b4f6cd4b973535501cc57ea", "fileid": "https://r2.ropensci.org/943d4542f0ff789c34ab6d73bfe32791ec809439ec8de897d4781f7953016d0c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/beckslab/actions/runs/38728880814" }, { "r": "4.5.3", "os": "mac", "version": "1.0.2", "date": "2026-10-15T11:44:13.000Z", "commit": "f1574173ec2a9aed1b4f6cd4b973535501cc57ea", "fileid": "https://r2.ropensci.org/7e1089056abb04b89bdd19b1844a801e548a2b1c770b87256ecfaa18e8df6014", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/beckslab/actions/runs/38728880814" }, { "r": "4.6.1", "os": "mac", "version": "1.0.2", "date": "2026-10-15T11:44:14.000Z", "commit": "f1574173ec2a9aed1b4f6cd4b973535501cc57ea", "fileid": "https://r2.ropensci.org/9a3bc732ee1d352847e412eac7efec1aeb0c332ec3eccd8d52211e797b4ffcc2", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/beckslab/actions/runs/38728880814" }, { "r": "4.6.0", "os": "wasm", "version": "1.0.2", "date": "2026-10-15T11:44:27.000Z", "commit": "f1574173ec2a9aed1b4f6cd4b973535501cc57ea", "fileid": "https://r2.ropensci.org/63abad451c5eab9068ad4e3913fc19f58a941798a744bf3a173b60965f4270ae", "status": "success", "buildurl": "https://github.com/r-universe/beckslab/actions/runs/38728880814" }, { "r": "4.7.0", "os": "win", "version": "1.0.2", "date": "2026-10-15T11:43:33.000Z", "commit": "f1574173ec2a9aed1b4f6cd4b973535501cc57ea", "fileid": "https://r2.ropensci.org/7b3a730d92f4ae2ff357d5c5373ba84eb423eecd850f3682a783f28d920e9740", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/beckslab/actions/runs/38728880814" }, { "r": "4.5.3", "os": "win", "version": "1.0.2", "date": "2026-10-15T11:43:50.000Z", "commit": "f1574173ec2a9aed1b4f6cd4b973535501cc57ea", "fileid": "https://r2.ropensci.org/374e1779281c4af69feb2f18a090c4d671f0074898596b8376171999348996dd", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/beckslab/actions/runs/38728880814" }, { "r": "4.6.1", "os": "win", "version": "1.0.2", "date": "2026-10-15T11:43:29.000Z", "commit": "f1574173ec2a9aed1b4f6cd4b973535501cc57ea", "fileid": "https://r2.ropensci.org/1733fe297cc34274e4212d5d4f157150e78f3e694d3c2dcfe8aa183a35fb29c3", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/beckslab/actions/runs/38728880814" } ] }